STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12290.1Hypothetical protein. (174 aa)    
Predicted Functional Partners:
hslJ
Heat shock protein HslJ.
  
     0.637
APC12994.1
Hypothetical protein.
  
     0.617
chiP
Chitoporin precursor.
  
     0.609
APC12375.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.484
APC12110.1
Hypothetical protein.
  
     0.470
APC12317.1
YfaZ precursor.
  
     0.464
dcuD_2
Putative cryptic C4-dicarboxylate transporter DcuD.
  
     0.444
ychN
DsrE/DsrF-like family protein.
  
     0.438
yjjP
Inner membrane protein YjjP.
  
     0.432
APC11503.1
Hypothetical protein.
  
     0.426
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.