STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12317.1YfaZ precursor. (180 aa)    
Predicted Functional Partners:
bssS
Biofilm regulator BssS.
  
     0.750
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.746
tomB
Hha toxicity modulator TomB.
  
     0.708
osmB
Osmotically-inducible lipoprotein B precursor.
  
     0.690
fimA_5
Type-1 fimbrial protein, A chain precursor.
  
     0.682
ynfD
Hypothetical protein.
  
     0.656
rcsD
Phosphotransferase RcsD.
  
     0.646
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.645
APC10037.1
Hypothetical protein.
  
     0.642
APC14007.1
Hypothetical protein.
  
     0.634
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.