STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12354.1Putative peptidase. (411 aa)    
Predicted Functional Partners:
yodF
Putative symporter YodF.
       0.725
APC12353.1
Hypothetical protein.
       0.725
trpC
Tryptophan biosynthesis protein TrpCF.
  
  
 0.470
APC10254.1
Site-specific tyrosine recombinase XerC.
  
     0.466
APC10255.1
Phage integrase family protein.
  
     0.465
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1.
  
     0.445
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
  
     0.440
yfcD
Putative Nudix hydrolase YfcD.
       0.427
APC12351.1
Hypothetical protein.
       0.403
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.