Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC12354.1Putative peptidase. (411 aa)    
Predicted Functional Partners:
yodF
Putative symporter YodF.
     
 0.729
APC12353.1
Hypothetical protein.
       0.727
hisS
Histidine--tRNA ligase.
 
  
 0.688
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.677
APC10254.1
Site-specific tyrosine recombinase XerC.
  
     0.466
APC10255.1
Phage integrase family protein.
  
     0.465
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
      
 0.463
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1.
  
     0.445
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
  
     0.440
yfcD
Putative Nudix hydrolase YfcD.
       0.427
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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