Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ripA_2HTH-type transcriptional repressor of iron proteins A. (267 aa)    
Predicted Functional Partners:
APC12369.1
Aromatic amino acid exporter.
 
     0.669
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.598
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
       0.551
cobB
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.486
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.483
gabR
HTH-type transcriptional regulatory protein GabR.
  
  
 0.472
flgG
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.423
ureR
Urease operon transcriptional activator.
  
 
 0.414
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.409
usg
USG-1 protein; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.409
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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