STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12375.1Tripartite tricarboxylate transporter TctB family protein. (143 aa)    
Predicted Functional Partners:
APC12376.1
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.989
APC12374.1
Tripartite tricarboxylate transporter family receptor.
 
  
 0.988
qseC_1
Sensor protein QseC.
 
   
 0.795
tctD
Transcriptional regulatory protein tctD.
 
     0.558
APC12994.1
Hypothetical protein.
  
     0.538
APC12290.1
Hypothetical protein.
  
     0.484
sodC1
Superoxide dismutase [Cu-Zn] 1 precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
     0.426
APC13087.1
Putative ammonia monooxygenase.
  
    0.426
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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