STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutU_1Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (559 aa)    
Predicted Functional Partners:
hutH_2
Histidine ammonia-lyase.
 
 0.998
hutI
Imidazolonepropionase.
 
 
 0.995
hutH_1
Histidine ammonia-lyase.
 
 0.991
hutU_2
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 
0.901
yvoA_2
HTH-type transcriptional repressor YvoA.
 
  
 0.726
APC13463.1
Cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
  
    0.591
proY_1
Proline-specific permease ProY.
  
    0.525
yvoA_3
HTH-type transcriptional repressor YvoA.
 
  
 0.467
APC13971.1
Hypothetical protein.
 
  
 0.442
hutG
Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
 
  
 0.427
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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