STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_2HTH-type transcriptional repressor YvoA. (250 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase.
 
  
 0.779
APC13971.1
Hypothetical protein.
 
  
 0.747
hutU_1
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.726
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.706
hutH_2
Histidine ammonia-lyase.
 
  
 0.693
phnR
Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons.
  
     0.680
hutU_2
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.564
ttrS
Tetrathionate sensor histidine kinase TtrS.
  
  
 0.440
btr
HTH-type transcriptional activator Btr.
  
    0.419
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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