STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mlaAPutative phospholipid-binding lipoprotein MlaA precursor. (250 aa)    
Predicted Functional Partners:
mlaC
Putative phospholipid-binding protein MlaC precursor.
 
 
 
 0.865
mlaD
Putative phospholipid ABC transporter-binding protein MlaD.
 
   
 0.820
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
   
 
 0.791
APC13325.1
Hypothetical protein.
    
 
 0.721
mtrR
HTH-type transcriptional regulator MtrR.
      
 0.637
norM
Multidrug resistance protein NorM.
      
 0.636
lptF
Lipopolysaccharide export system permease protein LptF.
  
   
 0.614
mlaE
Putative phospholipid ABC transporter permease protein MlaE.
 
   
 0.555
bamD
Outer membrane protein assembly factor BamD precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.
  
  
 0.554
lptD
LPS-assembly protein LptD precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.532
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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