STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12410.1Hypothetical protein. (182 aa)    
Predicted Functional Partners:
putA_2
Bifunctional protein PutA.
       0.609
ascD_3
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
       0.609
pkn1
Serine/threonine-protein kinase pkn1.
       0.590
APC12412.1
Hypothetical protein.
       0.509
carC
(5R)-carbapenem-3-carboxylate synthase.
       0.475
carA_2
Carbapenam-3-carboxylate synthase.
     
 0.459
echA8
Putative enoyl-CoA hydratase echA8.
       0.453
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.