STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaBAltronate oxidoreductase. (484 aa)    
Predicted Functional Partners:
uxaA_2
Altronate dehydratase.
 
 0.984
uxaC
Uronate isomerase.
 
 
 0.984
uxaA_1
Altronate dehydratase.
 
 0.981
mtlA
PTS system mannitol-specific EIICBA component.
 
  
 0.940
uxuA
Mannonate dehydratase.
 
  
 0.805
siaP
Sialic acid-binding periplasmic protein SiaP precursor.
 
   
 0.796
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.717
licR
Putative licABCH operon regulator.
  
  
 0.681
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
 
     0.603
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
 
   
 0.600
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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