STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qseESensor histidine kinase QseE. (479 aa)    
Predicted Functional Partners:
qseF
Transcriptional regulatory protein QseF.
 
 
 0.994
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
0.960
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.903
qseG
Quorum-sensing regulator protein G precursor.
 
   
 0.865
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 
 0.843
glnB
Nitrogen regulatory protein P-II 1; Belongs to the P(II) protein family.
     
 0.842
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.719
phoP
Virulence transcriptional regulatory protein PhoP.
 
 
 0.694
tctD
Transcriptional regulatory protein tctD.
 
 
 0.673
baeR
Transcriptional regulatory protein BaeR.
 
 
 0.670
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.