Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uhpATranscriptional regulatory protein UhpA. (208 aa)    
Predicted Functional Partners:
liaS
Sensor histidine kinase LiaS.
 
 
 0.994
narX_1
Nitrate/nitrite sensor protein NarX.
 
 
 0.793
narX_2
Nitrate/nitrite sensor protein NarX.
 
 
 0.786
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
 0.721
uhpC_1
Regulatory protein UhpC.
     
 0.720
crp_2
cAMP receptor protein.
  
 
 0.540
rcsD
Phosphotransferase RcsD.
   
 
 0.519
fbpA
Fe(3+)-binding periplasmic protein precursor.
       0.496
fnr_1
Fumarate and nitrate reduction regulatory protein.
   
 
 0.492
fnr_2
Fumarate and nitrate reduction regulatory protein.
   
 
 0.492
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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