STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbpAFe(3+)-binding periplasmic protein precursor. (343 aa)    
Predicted Functional Partners:
cysT_2
Sulfate transport system permease protein CysT.
 
 
 0.988
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.953
phnV_1
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
  
  0.939
pgtC
Phosphoglycerate transport regulatory protein PgtC precursor.
  
  
 
0.926
potA_3
Spermidine/putrescine import ATP-binding protein PotA.
 
  
  0.839
uhpC_1
Regulatory protein UhpC.
 
    0.832
cysW_2
Sulfate transport system permease protein CysW.
 
  
 0.644
liaS
Sensor histidine kinase LiaS.
 
     0.597
uhpA
Transcriptional regulatory protein UhpA.
       0.496
APC11113.1
Nickel/cobalt efflux protein RcnA.
  
     0.414
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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