STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaRHTH-type transcriptional regulator UlaR. (251 aa)    
Predicted Functional Partners:
sgbH
3-keto-L-gulonate-6-phosphate decarboxylase SgbH.
 
   
 0.776
deoR_1
Deoxyribose operon repressor.
  
     0.767
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
 
   
 0.708
bglG
Cryptic beta-glucoside bgl operon antiterminator.
   
  
 0.681
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
      
 0.664
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
     0.660
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
      
 0.647
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
     
 0.643
ulaA_2
Ascorbate-specific permease IIC component UlaA.
 
   
 0.607
fruA_1
PTS system fructose-specific EIIBC component.
  
  
 0.499
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.