STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12589.1Hypothetical protein. (687 aa)    
Predicted Functional Partners:
APC12585.1
Hypothetical protein.
  
  
 0.821
APC12581.1
Hypothetical protein.
     
 0.812
APC12588.1
Hypothetical protein.
       0.788
APC12582.1
Hypothetical protein.
     
 0.787
APC12583.1
Hypothetical protein.
       0.787
APC12584.1
Hypothetical protein.
       0.779
APC12586.1
Hypothetical protein.
       0.779
APC12587.1
Hypothetical protein.
       0.779
APC12590.1
Hypothetical protein.
       0.586
rrrD
Lysozyme RrrD.
  
  
 0.491
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.