STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desA3Stearoyl-CoA 9-desaturase. (365 aa)    
Predicted Functional Partners:
APC13563.1
Fatty acid desaturase.
 
  
 
0.915
pldA
Phospholipase A1 precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.900
APC13562.1
Fatty acid hydroxylase superfamily protein.
 
  
 0.790
APC13561.1
PAP2 superfamily protein.
 
  
 0.605
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
 
  
 0.492
hcr
NADH oxidoreductase hcr.
 
  
 0.482
APC13560.1
Hypothetical protein.
 
     0.458
fadH
2,4-dienoyl-CoA reductase [NADPH].
 
   
 0.447
APC12636.1
Hypothetical protein.
       0.407
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.