Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC12662.1Low-density lipoprotein receptor repeat class B. (298 aa)    
Predicted Functional Partners:
APC10905.1
Hypothetical protein.
  
 
 0.936
APC10907.1
Hypothetical protein.
  
 
 0.936
smc
Chromosome partition protein Smc.
   
 
 0.738
ftsK
DNA translocase FtsK.
    
 
 0.655
hmp
Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
     0.581
atsA_2
Arylsulfatase precursor.
  
     0.508
aroQ
3-dehydroquinate dehydratase.
  
     0.493
APC12661.1
5'-nucleotidase.
       0.472
APC12578.1
Hypothetical protein.
  
     0.465
pepO
Neutral endopeptidase.
  
    0.464
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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