STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12678.1Hypothetical protein; Belongs to the UPF0231 family. (123 aa)    
Predicted Functional Partners:
yceB
Putative lipoprotein YceB precursor.
  
     0.753
APC11576.1
Hypothetical protein.
  
     0.748
APC10654.1
Hypothetical protein.
  
     0.746
yijD
Inner membrane protein YijD.
  
     0.742
yfeY
RpoE-regulated lipoprotein.
  
     0.728
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.728
APC13480.1
Hypothetical protein.
  
     0.716
ycdY
Chaperone protein YcdY.
  
     0.715
APC10037.1
Hypothetical protein.
  
     0.713
APC12085.1
Hypothetical protein; Belongs to the UPF0181 family.
  
     0.684
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.