Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
gspEPutative type II secretion system protein E. (465 aa)    
Predicted Functional Partners:
epsF
Type II secretion system protein F.
 
 
 0.989
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
 
 0.863
pilE1
Fimbrial protein precursor.
  
  
 0.839
tcpE
Toxin coregulated pilus biosynthesis protein E.
 
 
 0.822
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
 
 
 
 0.819
APC11004.1
ComEC family competence protein.
 
  
 0.770
APC09793.1
Hypothetical protein.
  
 
 0.661
APC13232.1
Hypothetical protein.
  
 
 0.627
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
  
 
 0.604
traN
Conjugal transfer mating pair stabilization protein TraN.
  
 
 0.604
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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