STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEPutative type II secretion system protein E. (465 aa)    
Predicted Functional Partners:
epsF
Type II secretion system protein F.
 
 
 0.986
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
 
 0.856
pilE1
Fimbrial protein precursor.
 
  
 0.806
tcpE
Toxin coregulated pilus biosynthesis protein E.
 
 
 0.787
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor; Belongs to the bacterial secretin family.
 
 
 
 0.780
APC09793.1
Hypothetical protein.
  
 
 0.702
APC11004.1
ComEC family competence protein.
 
  
 0.671
APC13232.1
Hypothetical protein.
  
 
 0.625
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
  
 
 0.608
traN
Conjugal transfer mating pair stabilization protein TraN.
  
 
 0.608
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.