Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
murR_2HTH-type transcriptional regulator MurR. (278 aa)    
Predicted Functional Partners:
iolC
5-dehydro-2-deoxygluconokinase.
 
   
 0.856
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
   
 0.854
iolB
5-deoxy-glucuronate isomerase.
 
   
 0.825
iolE
Inosose dehydratase.
 
     0.812
idhA
Inositol 2-dehydrogenase.
 
     0.655
glvR
HTH-type transcriptional regulator GlvR.
  
   
 0.611
murR_1
HTH-type transcriptional regulator MurR.
  
   
 0.601
gfo
Glucose--fructose oxidoreductase precursor.
 
     0.594
ybbH_1
Putative HTH-type transcriptional regulator YbbH.
  
   
 0.551
ybbH_3
Putative HTH-type transcriptional regulator YbbH.
  
   
 0.532
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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