STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhXPutative ferredoxin-like protein YdhX precursor. (221 aa)    
Predicted Functional Partners:
nrfD
Polysulfide reductase, NrfD.
 
  
 0.935
nrfB
Cytochrome c-type protein NrfB precursor.
 
  
 0.887
ttrA
Tetrathionate reductase subunit A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.775
nrfA
Cytochrome c-552 precursor; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.751
ccmF_2
Cytochrome c-type biogenesis protein CcmF.
  
  
 0.728
nrfG
Formate-dependent nitrite reductase complex subunit NrfG; Possible subunit of a heme lyase.
       0.700
dmsA_2
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
   0.657
ynfF
Putative dimethyl sulfoxide reductase chain YnfF precursor.
  
   0.634
ynfE_2
Putative dimethyl sulfoxide reductase chain YnfE precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.618
dmsA_4
Dimethyl sulfoxide reductase DmsA precursor.
  
   0.598
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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