Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC12815.1Putative TonB-dependent receptor precursor. (987 aa)    
Predicted Functional Partners:
APC12814.1
TPR repeat-containing protein precursor.
 
     0.926
APC10350.1
Transport protein TonB.
 
 
 0.696
APC10348.1
Fec operon regulator FecR.
 
  
 0.695
APC12109.1
Gram-negative bacterial tonB protein.
 
 
 0.692
pupA
Ferric-pseudobactin 358 receptor precursor.
  
    0.613
fimA_2
Type-1 fimbrial protein, A chain precursor.
  
     0.566
aacA4
Aminoglycoside N(6')-acetyltransferase type 1.
  
     0.548
APC12913.1
Putative HTH-type transcriptional regulator; Belongs to the peptidase S24 family.
  
     0.523
APC12799.1
Transport protein TonB.
 
 
 0.506
APC12813.1
Hypothetical protein.
       0.505
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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