Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manZ_2Mannose permease IID component. (295 aa)    
Predicted Functional Partners:
agaC
N-acetylgalactosamine permease IIC component 1.
 0.999
manX_1
PTS system mannose-specific EIIAB component.
 
 
 0.997
manX_2
PTS system mannose-specific EIIAB component.
 
 0.997
levE
Fructose-specific phosphotransferase enzyme IIB component.
 
 0.997
manY
Mannose permease IIC component.
 
 0.989
nagA_3
N-acetylglucosamine-6-phosphate deacetylase.
 
  
  0.969
ptsH
Phosphocarrier protein HPr.
    
 0.904
agaS
Putative tagatose-6-phosphate ketose/aldose isomerase.
 
  
 0.891
kbaZ
D-tagatose-1,6-bisphosphate aldolase subunit KbaZ.
 
    0.746
chbB
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component.
  
  
 0.653
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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