Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12831.1Hypothetical protein. (491 aa)    
Predicted Functional Partners:
APC12830.1
Arylsulfatase.
 
     0.832
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
     0.792
APC14047.1
Hypothetical protein.
  
     0.647
betC
Choline-sulfatase.
 
     0.618
APC10184.1
Hypothetical protein.
  
     0.600
chuR
Anaerobic sulfatase-maturating enzyme.
 
     0.584
gatY
D-tagatose-1,6-bisphosphate aldolase subunit GatY.
 
     0.579
yajL_2
Chaperone protein YajL.
 
     0.563
APC12045.1
Putative DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.550
APC13766.1
Mu DNA-binding domain protein.
  
     0.533
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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