STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12841.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
APC13994.1
Phage head completion protein (GPL).
   
    0.846
APC13985.1
Gene 25-like lysozyme.
   
    0.843
APC13989.1
P2 phage tail completion protein R (GpR).
   
    0.772
APC13996.1
Phage major capsid protein, P2 family.
   
    0.772
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
   
    0.752
APC13988.1
Phage virion morphogenesis family protein.
   
    0.740
APC13998.1
Terminase-like family protein.
   
    0.734
APC13995.1
Phage small terminase subunit.
   
    0.699
APC11834.1
Phage portal protein.
   
    0.677
APC13999.1
Phage portal protein.
   
    0.677
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.