STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aaeB_2P-hydroxybenzoic acid efflux pump subunit AaeB. (533 aa)    
Predicted Functional Partners:
aaeA
P-hydroxybenzoic acid efflux pump subunit AaeA.
 
  
 0.927
APC12846.1
Inner membrane protein.
       0.705
APC12843.1
Hypothetical protein.
       0.651
iscU
NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.516
oprB
Porin B precursor.
  
     0.497
cdh
CDP-diacylglycerol pyrophosphatase.
  
     0.490
cyoD
Cytochrome bo(3) ubiquinol oxidase subunit 4.
  
     0.467
slyA
Transcriptional regulator SlyA.
 
   
 0.467
mdtN_1
Multidrug resistance protein MdtN.
 
  
 0.445
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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