STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iaaH_2Indole-3-acetyl-aspartic acid hydrolase. (424 aa)    
Predicted Functional Partners:
dcuD_3
Putative cryptic C4-dicarboxylate transporter DcuD.
 
     0.779
abgT_1
P-aminobenzoyl-glutamate transport protein.
 
  
 0.566
ansB_2
L-asparaginase precursor.
       0.565
abgT_3
P-aminobenzoyl-glutamate transport protein.
 
  
 0.489
abgB
P-aminobenzoyl-glutamate hydrolase subunit B.
 
  
0.472
abgT_2
P-aminobenzoyl-glutamate transport protein.
 
  
 0.455
hyuC
Hydantoin utilization protein C.
 
     0.445
APC12855.1
Threonine and homoserine efflux system.
       0.430
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.414
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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