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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12886.1Terminase-like family protein. (480 aa)    
Predicted Functional Partners:
APC12885.1
Hypothetical protein.
      0.902
APC12887.1
Terminase small subunit.
       0.779
APC12883.1
P22 coat protein - gene protein 5.
       0.749
APC12884.1
Bacteriophage, scaffolding protein.
       0.746
APC11056.1
Hypothetical protein.
  
     0.702
APC12878.1
Hypothetical protein.
     
 0.619
APC11057.1
Hypothetical protein.
  
     0.613
APC11066.1
Lecithin:cholesterol acyltransferase.
  
     0.606
APC12879.1
Hypothetical protein.
       0.589
APC12880.1
Phage stabilization protein.
       0.589
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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