Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12887.1Terminase small subunit. (162 aa)    
Predicted Functional Partners:
APC12885.1
Hypothetical protein.
       0.799
APC12886.1
Terminase-like family protein.
       0.779
APC12883.1
P22 coat protein - gene protein 5.
       0.775
APC12884.1
Bacteriophage, scaffolding protein.
       0.746
APC12878.1
Hypothetical protein.
       0.588
APC12879.1
Hypothetical protein.
       0.588
APC12880.1
Phage stabilization protein.
       0.588
APC12881.1
P22 tail accessory factor.
       0.588
APC12882.1
Hypothetical protein.
       0.588
APC12875.1
Hypothetical protein.
       0.580
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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