Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12892.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
APC12891.1
Bacteriophage lysis protein.
       0.775
APC12893.1
Hypothetical protein.
       0.773
APC12894.1
Hypothetical protein.
       0.773
APC10179.1
Hypothetical protein.
 
     0.723
APC10678.1
L,D-transpeptidase catalytic domain.
  
     0.568
APC10178.1
Hypothetical protein.
 
     0.515
APC12895.1
Hypothetical protein.
       0.480
APC10905.1
Hypothetical protein.
  
  
 0.448
APC10907.1
Hypothetical protein.
  
  
 0.448
rlpA
Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.438
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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