Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12913.1Putative HTH-type transcriptional regulator; Belongs to the peptidase S24 family. (236 aa)    
Predicted Functional Partners:
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.855
APC12909.1
Bacteriophage replication protein O.
 
   
 0.764
fimA_2
Type-1 fimbrial protein, A chain precursor.
  
     0.759
APC12939.1
Fibronectin type III protein.
  
   
 0.721
APC11904.1
Ferredoxin.
  
     0.711
APC12555.1
Hypothetical protein.
  
     0.708
APC14022.1
Polysaccharide biosynthesis protein.
  
     0.695
APC12585.1
Hypothetical protein.
  
     0.688
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.682
APC12583.1
Hypothetical protein.
  
     0.642
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (14%) [HD]