STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12935.1Putative prophage phiRv2 integrase. (385 aa)    
Predicted Functional Partners:
APC11503.1
Hypothetical protein.
  
     0.583
dmsC_4
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.552
APC12933.1
Hypothetical protein; MT-A70.
 
    0.539
dmsC_3
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.515
APC11245.1
RNA ligase.
  
     0.489
proX_2
Prolyl-tRNA editing protein ProX.
  
     0.452
APC12931.1
Hypothetical protein.
       0.443
APC12932.1
Hypothetical protein.
       0.443
APC12934.1
Hypothetical protein.
       0.443
intS_4
Putative prophage CPS-53 integrase; Belongs to the 'phage' integrase family.
       0.429
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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