STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12938.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
APC12937.1
Hypothetical protein.
       0.773
APC12939.1
Fibronectin type III protein.
  
  
 0.658
APC12940.1
Hypothetical protein.
       0.606
APC12950.1
Phage head-tail joining protein.
  
   0.440
APC12943.1
Hypothetical protein.
  
  
 0.437
APC12944.1
Lambda phage tail tape-measure protein (Tape_meas_lam_C).
  
  
 0.431
APC12941.1
Hypothetical protein.
       0.421
APC12953.1
Phage capsid family protein.
   
 
 0.417
APC12951.1
Phage gp6-like head-tail connector protein.
   
   0.414
APC12956.1
Phage portal protein.
   
   0.412
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.