Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
APC12944.1Lambda phage tail tape-measure protein (Tape_meas_lam_C). (1034 aa)    
Predicted Functional Partners:
APC12939.1
Fibronectin type III protein.
 
   0.851
APC12949.1
Hypothetical protein.
 
     0.828
APC12950.1
Phage head-tail joining protein.
 
     0.789
APC12942.1
Hypothetical protein.
       0.784
APC12943.1
Hypothetical protein.
       0.773
APC12947.1
Phage tail protein.
       0.691
APC12945.1
Hypothetical protein.
     
 0.679
APC12946.1
Phage tail assembly chaperone.
     
 0.679
APC12977.1
DNA N-6-adenine-methyltransferase (Dam).
  
    0.652
APC12951.1
Phage gp6-like head-tail connector protein.
   
   0.641
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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