Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12953.1Phage capsid family protein. (404 aa)    
Predicted Functional Partners:
APC12956.1
Phage portal protein.
 
 
 
 0.978
APC12957.1
Phage Terminase.
 
   
 0.956
APC12958.1
Phage terminase, small subunit.
 
   
 0.956
APC12955.1
Hypothetical protein.
 
    0.945
APC12954.1
ATP-dependent Clp protease proteolytic subunit.
 
    0.940
APC12960.1
Hypothetical protein.
 
   
 0.898
APC12950.1
Phage head-tail joining protein.
 
 
 0.897
APC12951.1
Phage gp6-like head-tail connector protein.
  
 
 0.830
APC12949.1
Hypothetical protein.
 
    0.748
APC12948.1
Hypothetical protein.
       0.678
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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