STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12958.1Phage terminase, small subunit. (155 aa)    
Predicted Functional Partners:
APC12957.1
Phage Terminase.
    0.986
APC12956.1
Phage portal protein.
 
  
 0.968
APC12953.1
Phage capsid family protein.
 
   
 0.947
APC12955.1
Hypothetical protein.
 
    0.947
APC12960.1
Hypothetical protein.
 
    0.946
APC12954.1
ATP-dependent Clp protease proteolytic subunit.
 
    0.938
APC12950.1
Phage head-tail joining protein.
 
     0.736
APC12949.1
Hypothetical protein.
 
     0.712
APC12951.1
Phage gp6-like head-tail connector protein.
       0.635
APC12948.1
Hypothetical protein.
       0.628
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.