STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acr1Fatty acyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa)    
Predicted Functional Partners:
hflK_1
Modulator of FtsH protease HflK.
   
 
 0.718
tesA
Acyl-CoA thioesterase I precursor.
  
    0.699
trxA_2
Thioredoxin.
       0.646
ybbJ
Inner membrane protein YbbJ.
  
    0.609
lpdA
Dihydrolipoyl dehydrogenase.
  
  
 0.602
tehB
Putative S-adenosyl-L-methionine-dependent methyltransferase TehB.
     
 0.524
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
     
 0.509
APC13009.1
FtsX-like permease family protein.
     
 0.498
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.452
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.449
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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