Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ybbJInner membrane protein YbbJ. (159 aa)    
Predicted Functional Partners:
hflK_1
Modulator of FtsH protease HflK.
 
 
 0.990
trxA_2
Thioredoxin.
  
    0.809
yqiK
Inner membrane protein YqiK.
  
  
 0.749
APC10227.1
SPFH domain / Band 7 family protein.
  
 
 0.643
acr1
Fatty acyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.609
tesA
Acyl-CoA thioesterase I precursor.
       0.496
hflC
Modulator of FtsH protease HflC; HflC and HflK could regulate a protease.
 
 
 0.431
hflK_2
Modulator of FtsH protease HflK; HflC and HflK could encode or regulate a protease.
 
 
 0.429
APC11533.1
SPFH domain / Band 7 family protein.
 
 
 0.420
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
     0.405
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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