STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copACopper-exporting P-type ATPase A. (980 aa)    
Predicted Functional Partners:
sodC1
Superoxide dismutase [Cu-Zn] 1 precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.973
zntA
Lead, cadmium, zinc and mercury-transporting ATPase.
 
 
0.736
cueR_2
HTH-type transcriptional regulator CueR.
 
  
 0.716
actP_2
Copper-transporting P-type ATPase.
 
 
0.679
APC13712.1
Heavy-metal-associated domain protein.
  
 
 0.677
cueO
Blue copper oxidase CueO precursor.
 
 
 0.675
frmR
Transcriptional repressor FrmR.
  
  
 0.674
ftsP
Cell division protein FtsP precursor.
 
 
 0.668
dps
DNA protection during starvation protein; Belongs to the Dps family.
  
  
 0.639
fieF
Ferrous-iron efflux pump FieF; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.628
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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