STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpR_2Glycerol-3-phosphate regulon repressor. (258 aa)    
Predicted Functional Partners:
glpA_1
Anaerobic glycerol-3-phosphate dehydrogenase subunit A.
       0.665
APC13028.1
Dihydropyrimidine dehydrogenase subunit A.
  
    0.662
fruA_2
PTS system fructose-specific EIIBC component.
 
  
 0.570
fruA_1
PTS system fructose-specific EIIBC component.
 
  
 0.569
APC13026.1
Hypothetical protein.
       0.517
lacC_1
Tagatose-6-phosphate kinase.
 
  
 0.496
lacC_3
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.490
lacC_2
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.485
glpK_1
Glycerol kinase; Belongs to the FGGY kinase family.
  
  
 0.454
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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