STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13028.1Dihydropyrimidine dehydrogenase subunit A. (409 aa)    
Predicted Functional Partners:
glpA_1
Anaerobic glycerol-3-phosphate dehydrogenase subunit A.
   
 0.985
andAb
Anthranilate 1,2-dioxygenase ferredoxin subunit.
  
 
 0.696
glpK_1
Glycerol kinase; Belongs to the FGGY kinase family.
 
 
 
 0.665
glpR_2
Glycerol-3-phosphate regulon repressor.
  
    0.662
pcoC
Copper resistance protein C precursor.
    
   0.639
hisE
Phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
   
    0.631
ribC
Riboflavin synthase.
   
    0.595
APC13163.1
Hypothetical protein.
  
    0.564
metA
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
   
    0.523
APC13031.1
Ethanolamine utilization protein, EutH.
 
     0.513
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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