STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimA_5Type-1 fimbrial protein, A chain precursor. (181 aa)    
Predicted Functional Partners:
elfC_3
Putative outer membrane usher protein ElfC precursor.
 
   0.891
fimC
Chaperone protein FimC precursor.
 
   0.867
sfaH
S-fimbrial protein subunit SfaH.
   
 
 0.796
rcsD
Phosphotransferase RcsD.
  
     0.767
rof
Rho-binding antiterminator.
  
     0.757
elfC_2
Putative outer membrane usher protein ElfC precursor.
  
   0.747
bssS
Biofilm regulator BssS.
  
     0.739
sfaS
S-fimbrial adhesin protein SfaS precursor.
   
   0.731
smfA_2
Fimbria A protein precursor.
  
     0.718
smfA_5
Fimbria A protein precursor.
  
     0.716
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.