STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
canCarbonic anhydrase 2; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (217 aa)    
Predicted Functional Partners:
focA
Putative formate transporter 1.
  
  
 0.837
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.565
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.565
paaY
Putative acetyltransferase.
    
 
 0.536
yrdA_3
Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ.
    
 
 0.536
yrdA_1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
    
 
 0.536
APC13873.1
Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ.
    
 
 0.536
dauA_1
C4-dicarboxylic acid transporter DauA.
 
  
 0.499
yadH
Inner membrane transport permease YadH.
       0.453
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
       0.433
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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