STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13117.1Efem/EfeO family lipoprotein precursor. (300 aa)    
Predicted Functional Partners:
efeB
Deferrochelatase/peroxidase EfeB precursor; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.993
efeU
Ferrous iron permease EfeU.
 
  
 0.991
tpd
34 kDa membrane antigen precursor.
  
    0.916
APC13115.1
Hypothetical protein.
 
     0.804
yfeX
Putative deferrochelatase/peroxidase YfeX.
 
  
 0.797
tetR_2
Tetracycline repressor protein class H.
  
     0.590
APC10179.1
Hypothetical protein.
  
     0.538
tehB
Putative S-adenosyl-L-methionine-dependent methyltransferase TehB.
  
     0.480
sotB
Sugar efflux transporter; Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites; Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family.
  
     0.474
APC10178.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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