STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA_3D-amino acid dehydrogenase small subunit. (413 aa)    
Predicted Functional Partners:
dadA_2
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.
  
  
 
0.917
tyrB
Aromatic-amino-acid aminotransferase.
     
  0.900
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
aspC
Aspartate aminotransferase.
     
  0.900
hisC2
Histidinol-phosphate aminotransferase 2.
     
  0.900
dat
D-alanine aminotransferase.
     
 0.900
yabJ_4
Enamine/imine deaminase.
 
    0.819
cynR_1
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
 
     0.677
APC11735.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
   
 0.423
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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