Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
metQ_2D-methionine-binding lipoprotein MetQ precursor; Belongs to the nlpA lipoprotein family. (273 aa)    
Predicted Functional Partners:
metI_2
D-methionine transport system permease protein MetI.
 0.998
metI_1
D-methionine transport system permease protein MetI.
 0.994
metN_2
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.994
metN_1
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.987
metQ_1
D-methionine-binding lipoprotein MetQ precursor.
  
  
 
0.925
mdeA_1
Methionine gamma-lyase.
  
    0.610
APC13688.1
Hypothetical protein.
  
 
 0.550
tsaA_2
Putative tRNA (adenine(37)-N6)-methyltransferase.
       0.501
rcsF
Outer membrane lipoprotein RcsF precursor; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
       0.500
gmhB
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
       0.454
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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