STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13263.1LigB family dioxygenase. (267 aa)    
Predicted Functional Partners:
yhhW_2
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.701
yhhW_1
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.669
yhhW_3
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.657
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
 0.542
yhaK
Pirin-like protein YhaK; Belongs to the pirin family.
 
  
 0.435
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
  
  
 0.428
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.414
sseA
3-mercaptopyruvate sulfurtransferase.
 
    
 0.412
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
  
  
 0.409
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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