Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC13263.1LigB family dioxygenase. (267 aa)    
Predicted Functional Partners:
yhhW_2
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.777
yhhW_1
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.667
yhhW_3
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.656
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
 0.531
yhaK
Pirin-like protein YhaK; Belongs to the pirin family.
 
  
 0.471
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
  
  
 0.446
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.414
sseA
3-mercaptopyruvate sulfurtransferase.
 
      0.411
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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