STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuB_2Vitamin B12 transporter BtuB. (686 aa)    
Predicted Functional Partners:
APC12109.1
Gram-negative bacterial tonB protein.
 
 
 0.801
APC10350.1
Transport protein TonB.
  
 
 0.771
APC12026.1
Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.771
APC10348.1
Fec operon regulator FecR.
 
  
 0.617
APC12110.1
Hypothetical protein.
  
  
 0.558
fcuA
Ferrichrome receptor FcuA precursor.
  
  
 0.554
APC09919.1
Type III secretion system protein SpaO.
  
     0.549
fhuA
Ferrichrome-iron receptor precursor.
  
  
 0.529
yfmC
Fe(3+)-citrate-binding protein YfmC precursor.
 
  
 0.506
APC13292.1
Putative ABC transporter ATP-binding protein.
 
  
 0.463
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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