STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpFPutative D,D-dipeptide transport ATP-binding protein DdpF. (206 aa)    
Predicted Functional Partners:
appA_2
Oligopeptide-binding protein AppA precursor.
 
 
 0.995
gsiA_2
Glutathione import ATP-binding protein GsiA.
    0.980
dppC_3
Dipeptide transport system permease protein DppC.
 
  
 0.959
gsiC_2
Glutathione transport system permease protein GsiC.
 
  
 0.952
oppD_2
Oligopeptide transport ATP-binding protein OppD.
    0.881
dppC_2
Dipeptide transport system permease protein DppC.
 
  
 0.824
appA_1
Oligopeptide-binding protein AppA precursor.
 
  
 0.798
gsiC_1
Glutathione transport system permease protein GsiC.
 
  
 0.798
oppD_3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
   
0.767
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
   
0.756
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.