STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybBPutative Ni/Fe-hydrogenase 2 b-type cytochrome subunit. (395 aa)    
Predicted Functional Partners:
fdnH_2
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit.
 
 0.994
hybO
Hydrogenase-2 small chain precursor.
 
  
 0.979
hybE
Hydrogenase-2 operon protein HybE.
 
  
 0.973
hybC
Hydrogenase-2 large chain precursor; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.968
hybD
Hydrogenase 2 maturation protease.
 
  
 0.943
hypA
Hydrogenase nickel incorporation protein HybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
  
 0.821
tufA_1
Elongation factor Tu.
  
 
 0.778
tufA_2
Elongation factor Tu.
  
 
 0.778
APC11775.1
Gluconate 2-dehydrogenase cytochrome c subunit precursor.
   
 
 0.756
fdhC
Fructose dehydrogenase cytochrome subunit precursor.
   
 
 0.756
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.